Publications

2017

1. Genome analysis of the foxtail millet pathogen Sclerospora graminicola reveals the complex effector repertoire of graminicolous downy mildews.
Kobayashi, M., Hiraka, Y., Abe, A., Yaegashi, H., Natsume, S., Kikuchi, H., Takagi, H., Saitoh, H., Win J, Kamoun S.,Terauchi, R.

2. Genome sequencing of the staple food crop white Guinea yam enables the development of a molecular marker for sex determination.
Tamiru, M., Natsume, S., Takagi, H., White, B., Yaegashi, H., Shimizu, M., Yoshida, K., Uemura, A., Oikawa, K., Abe, A., Urasaki, N., Matsumura, H., Babil, P., Yamanaka, S., Matsumoto, R., Muranaka, M., Girma, G., Lopez-Montes, A., Gedil, M., Bhattacharjee, R., Abberton, M., Kumar, L., Rabbi, I., Tsujimura, M., Terachi, T., Haerty, W., Corpas, M., Kamoun, S., Kahl, G., Takagi, H., Asiedu, R., Terauchi, R.

3. Transcriptional and post-transcriptional mechanisms limit Heading date 1 (Hd1) function to adapt rice to high latitudes.
Goretti D., Martignago, D., Landini M., Brambilla V., Gomez-Ariza. J., et al. Takagi, H., Terauchi, R., Mantovani, R., Fornara F.
PLoS Genetics DOI:10.1371/journal.pg en.1006530

4. Screening of rice mutants with improved saccharification efficiency results in the identification of CONSTITUTIVE PHOTOMORPHOGENIC 1 and GOLD HULL AND INTERNODE 1.
Hirano, K., Masuda, R., Takase, W., Morinaka, Y., et al. Takagi, H., Yaegashi, H., Natsume, S., Terauchi, R. et al. Sazuka, T.
Planta 246:61-74.

5. Exome QTL-seq maps monogenic locus and QTLs in barley.
Hisano H., Sakamoto K., Takagi, H., Terauchi, R., Sato, K.
BMC Genomics 18:125.

6. Dysfunction of Arabidopsis MACPF domain protein activates programmed cell death via tryptophan metabolism in MAMP-triggered immunity.
Fukunaga, S., Sogame, M., Hata, M., Singkaravanit-Ogawa, S., Piślewska-Bednarek, M., Onozawa-Komori, M., Nishiuchi, T., Hiruma, K., Saitoh, H., Terauchi, R., Kitakura, S., Inoue, Y., Bednarek, P., Schulze-Lefert, P., Takano, Y.
Plant J. 89:381-393.

7. Draft genome sequence of bitter gourd (Momordica charantia), a vegetable and medicinal plant in tropical and subtropical regions.
Urasaki, N., Takagi, H., Natsume, S., Uemura, A., et al. Terauchi, R., Matsumura, H.
DNA Res. 24:51-58.

8. Evolution of the wheat blast fungus through functional losses in a host specificity determinant.
Inoue, Y., Vy, T.T.P., Yoshida, K., Asano, H., Mitsuoka, C., Asuke, S., Anh, V.L., Cumagun, C.J.R., Chuma, I., Terauchi, R., Kato, K., Mitchell, T., Valent, B., Farman, M., Tosa, Y.
Science 357:80-83.

9. NLR network mediates immunity to diverse plant pathogens.
Wu, C.-H., Abd-El-Haliem, A., Bozkurt, T.O., Belhaj, K., Terauchi, R., Vossen, J.H., Kamoun, S.
PNAS 114:8113-8118.

10. Gene flow between divergent cereal-and grass-specific lineages of the rice blast fungus Magnaporthe oryzae.
Gladieux, P., Condon, B., Ravel, S., Soanes, D., Leodato, J., Maciel, N., Nhani, Jr. A., Terauchi, R., Lebrun, M.-H., Tharreau, D., Mitchell, T., Pedley, K.F., Valent, B., Talbot, N., Farman, M., Fournier, E.
Biorxiv doi: https://doi.org/10.1101/161513

11. HT-SuperSAGE of the gut tissue of a Vip3Aa-resistant Heliothis virescens (Lepidoptera: Noctuidae) strain provides insights into the basis of resistance.
Ayra-Pardo, C., Ochagavía, M.E., Raymond, B., Gulzar, A., Rodríguez-Cabrera, L., Rodríguez de la Noval, C., Morán Bertot, I., Terauchi, R., Yoshida, K., Matsumura, H., Téllez Rodríguez, P., Hernández Hernández, D., Borrás-Hidalgo, O., Wright, D.J.
Insect Sci. doi: 10.1111/1744-7917.12535.

12. Lessons in effector and NLR biology of plant-microbe systems.
Białas, A., Zess, E.K., De la Concepcion, J.C., Franceschetti, M., Pennington, H.G., Yoshida, K., Upson, J.L., Chanclud, E., Wu, C.H., Langner, T., Maqbool, A., Varden, F.A., Derevnina, L., Belhaj, K., Fujisaki, K., Saitoh, H., Terauchi, R., Banfield, M.J., Kamoun, S.
MPMI DOI: 10.1094/MPMI-08-17-0196- FI

13. Large-scale molecular genetic analysis in plant pathogenic fungi: A decade of genome-wide functional analysis.
Motaung, T.E., Tsilo, T.J., Saitoh, H.
Mol. Plant Pathol. (DOI: 10.1111/mpp.12497)

14. Next generation breeding of rice by whole genome approaches.
Abe, A., Takagi, H., Yaegashi, H., Natsume, S., Utsushi, H., Tamiru M, Terauchi, R.
In: Sasaki T, Ashikari, M. (eds) Rice Genomics, Genetics and Breeding. Springer. In press.

2016

1. QTL-seq for rapid identification of candidate genes for 100-seed weight and root / total plant dry weight ratio under rainfed conditions in chickpea.
Singh, V.K., Khan, A.W., Jaganathan, D., Thudi, M., Roorkiwal, M., Takagi, H., Garg, V., Kumar, V., Chitikineni, A., Gaur, P.M., Sutton, T., Terauchi, R., Varshney, R.K.
Plant Biotechnology Journal doi:10.1111/pgi.12567.

2. Expression of a Nicotiana tabacum pathogen-induced gene is involved in the susceptibility to black shank.
Portieles, R., Canales, E., Chacon, O., Silva, Y., Hernández, I., López, Y., Rodríguez, M., Terauchi, R., Matsumura, H., Borroto, C., Walton, J.D., Santos, R., Borrás-Hidalgo, O.
Functional Plant Biology 43(6) 534-541 https://doi.org/10.1071/FP15350.

3. Genetic analysis of NEKODE1 gene involved in panicle branching of foxtail millet, Setaria italica (L.) P. Beauv., and mapping by using QTL-seq.
Masumoto, H., Takagi, H., Mukainari, Y., Terauchi, R., Fukunaga, K.
Mol. Breeding 36:59. Doi:10.1007/s11032-016-0481-z.

4. Magnaporthe oryzae Glycine-rich secretion protein, Rbf1 critically participates in pathogenicity through the focal formation of the fiotrophic interfacial complex.
Nishimura, T., Mochizuki, S., Ishii-Minami, N., Fujisawa, Y., Kawahara, Y., Yoshida, Y., Okada, K., Ando, S., Matsumura, H., Terauchi, R., Minami, E., Nishizawa, Y.
PLoS Pathogens https://doi.org/10.1371/journal.ppat.1005921

5. Combining mapping of physiological quantitative trait loci and transcriptome for cold tolerance for counteracting male sterility induced by low temperatures during reproductive stage in rice.
Shimono, H., Abe, A., Aoki, N., Koumoto, T., Sato, M., Yokoi, S., Kuroda, E., Endo, T., Saeki, K.I, Nagano, K.
Physiol Plantarum 157: 175–192.

6. Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements.
Yoshida, K., Saunders, DGO., Mitsuoka, C., Natsume, S., Kosugi, S., Saitoh, H., Inoue, Y., Chuma, I., Tosa, Y., Cano, LM., Kamoun, S., Terauchi, R.
BMC genomics 17:370

7. Whole genome sequencing approaches to understand Magnaporthe-rice interactions.
Terauchi, R., Kanzaki, H., Fujisaki, K., Takagi, H., Abe, A., Yoshida, K., Okuyama, Y., Tamiru, M., Saitoh, H.
Physiol. Mol. Plant Pathol. doi:10.1016/j.pmpp.2016.03.007

8. A chloroplast-localized protein LESION AND LAMINA BENDING affects defence and growth responses in rice.
Tamiru, M., Takagi, H., Abe, A., Yokota, T., Kanzaki, H., Okamoto, H., Saitoh, H., Takahashi, H., Fujisaki, K., Oikawa, K., Uemura, A., Natsume, S., Jikumaru, Y., Matsuura, H., Umemura, K., Terry, ML., Terauchi, R.
New Phytol. 210:1282-1297.

2015

1. Identification and enzymatic characterization of an endo-1,3-β-glucanase from Euglena gracilis.
Takeda, T., Nakano, Y., Takahashi, M., Konno, N., Sakamoto, Y., Arashida, R., Marukawa, Y., Yoshida, E., Ishikawa, T., Suzuki, K. 
Phytochemistry 116:21-27.

2. Structural basis of pathogen recognition by an integrated HMA domain in a plant immune receptor.
Maqbool, A., Saitoh, H., Franceschetti, M., Stevenson, CEM., Uemura, A., Kanzaki, H., Kamoun, S., Terauchi, R., BAnfield, MJ. 
eLife 4:e08709.

3. Rice exo70 interacts with a fungal effector, AVR-Pii and is required for AVR-Pii-triggered immunity.
Fujisaki, K., Abe, Y., Ito, A., Saitoh, H., Yoshida, K., Kanzaki, H., Kanzaki, E., Utsushi, H., Yamashita, T., Kamoun, S., Terauchi, R. 
Plant J. 53:875-887.

4. WIPPER: an accurate and efficient field phenotyping platform for large-scale applications.
Utsushi, H., Abe, A., Tamiru, M., Ogasawara, Y., Obara, T., Sato, E., Ochiai, Y., Terauchi, R., Takagi, H. 
Breed. Sci. 65(3):285-289.

5. MutMap accelerates breeding of a salt-tolerant rice cultivar.
Takagi, H., Tamiru, M., Abe, A., Yoshida, K., Uemura, A., Yaegashi, H., Obara, T., Oikawa, K., Utsushi, H., Kanzaki, E., Mitsuoka, C., Natsume, S., Kosugi, S., Kanzaki, H., Matsumura, H, Urasaki, N., Kamoun, S., Terauchi, R. 
Nat. Biotech. 33:445-449.

6. A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in rice (Oryza sativa L.). 
Tamiru, M., Undan, J. R., Takagi, H., Abe, A., Yoshida, K., Undan, J.Q., Natsume, S., Uemura, A., Saitoh, H., Matsumura, H., Urasaki, N., Yokota, T., Terauchi, R. 
Plant Mol. Biol. 88:85-99.

8. Development of genomic simple sequence repeat markers for yam.
Tamiru, M., Yamanaka, S., Misuoka, C., Babil, P., Takagi, H, Lopez-Montez, A., Sartie, A., Asiedu, R., Terauchi, R. 
Crop Sci. 55:2191-2200.

9. Genome sequence comparison reveals a candidate gene involved in male-hermaphrodite differentiation in papaya (Carica papaya) trees.
Ueno, H., Urasaki, N., Natsume, S., Yoshida, K., Tarora, K., Shudo, A., Terauchi, R., Matsumura, H. 
Mol. Genet. Genomics 290:661-670.

10. The draft genome of hop (Humulus lupulus), an essence for brewing.
Natsume, S., Takagi, H., Shiraishi, A., Murata, J., Toyonaga, H., Patzak, J., Takagi, M., Yaegashi, H., Uemura, A., Mitusoka, C., Yoshida, K., Krofta, K., Satake, H., Terauchi, R., Ono, E. 
Plant Cell Physiol. 56:428-441.

11. The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes and AAA-type ATPase, is implicated in defense response.
Fekih, R., Tamiru, M., Kanzaki, H., Abe, A., Yoshida, K., Kanzaki, E., Saitoh, H., Takagi, H., Natsume, S., Undan, J. R., Undan, J., Terauchi, R. 
Mol. Genet. Genomics 290:611-622.

12. Whole genome sequencing to identify genes and QTL in rice.
Terauchi, R., Abe, A., Takagi, H., Tamiru, M., Fekih, R., Natsume, S., Yaegashi, H., Kosugi, S., Kanzaki, H., Matsumura, H., Saitoh, H., Yoshida, K., Cano, L., Kamoun, S. 
In Advances in the Understanding of Biological Sciences Using Next Generation Sequencing (NGS) Approaches pp.33-41

2014

1. MoST1 encoding a hexose transporter-like protein is involved in both conidiation and mycelial melanization of Magnaporthe oryzae.
Saitoh, H., HIrabuchi, A., Fujisawa, S., Mitsuoka, C., Terauchi, R. Takano, Y.
FEMS Microbiology Letters 352: 104-113.

2. The tillering phenotype of the rice plastid terminal oxidase (PTOX) loss-of-function mutant is associated with strigolactone deficiency.
Tamiru, M., Abe, A., Utsushi, H., Yoshida, K., Takagi, H., Fujisaki, K., Undan, JR., Rakshit, S., Takaichi, S., Jikumaru, Y., Yokota, T., Terry, MJ., Terauchi, R. 
New Phytologist 202: 116-31.

3. Colletotrichum orbiculare secretes virulence effectors to a biotrophic interface at the primary hyphal neck via exocytosis coupled with SEC22-mediated traffic. Irieda, 
H., Maeda, H., Akiyama, K., Hagiwara, A., Saitoh, H., Uemura, A., Terauchi, R. and Takano, Y. 
The Plant Cell, Vol. 26, 2265-2281

4. Protoplast cell death assay to study Magnaporthe oryzae AVR gene function in rice.
 Kanzaki, H., Yoshida, K., Saitoh, H., Tamiru, M. and Terauchi, R. 
Methods in Molecular Biology, Vol. 1127, 269-275

5. Harvesting the promising fruits of genomics: applying genome sequencing technologies to crop breeding.
Varshney, R. K., Terauchi, R., & McCouch, S. R. 
PLoS biology, 12(6), e1001883.

6. The rice (Oryza sativa L.) LESION MIMIC RESEMBLING, which encodes an AAA-type ATPase, is implicated in defense response. 
Fekih, R., Tamiru, M., Kanzaki, H., Abe, A., Yoshida, K., Kanzaki, E., Saitoh, H., Takagi, H., Natsume, S., Undan, JR., Undan, J. & Terauchi, R. (2014). Molecular Genetics and Genomics, 1-12.

7. The Draft Genome of Hop (Humulus lupulus), an Essence for Brewing.
Natsume, S., Takagi, H., Shiraishi, A., Murata, J., Toyonaga, H., Patzak, J., Takagi, M., Yaegashi, H., Uemura, A., Mitsuoka, C., Yoshida, K., Krofta, K., Satake, H., Terauchi, R. & Ono, E. (2014).  Plant and Cell Physiology, pcu169.

2013

1. QTL map meets population genomics: an application to rice.
Fawcett JA., Kado, T., Sasaki, E., Takuno, S., Yoshida, K., Sugino, RP., Kosugi, S., Natsume, S., Mitsuoka, C., Uemura, A., Takagi, H., Abe, A., Ishii, T., Terauchi, R., Innan, H.
PLoS ONE 8(12): e83720. doi:10.1371/journal.pone.0083720 

2. Coval: improving alignment quality and variant calling accuracy for next-generation sequencing data. 
Kosugi, S., Natsume, S., Yoshida, K., MacLean, D., Cano, L., Kamoun, S., Terauchi, R. 
PLoS ONE 8(10): e75402. doi:10.1371/journal.pone.0075402 

3. MutMap+: Genetic Mapping and Mutant Identification without Crossing in Rice. 
Fekih, R., Takagi, H., Tamiru, M., Abe, A., Natsume, S., Yaegashi, H., Sharma, S., Sharma, S., Kanzaki, H., Matsumura, H., Saitoh, H., Mitsuoka, C., Utsushi, H., Uemura, A., Kanzaki, E., Kosugi, S., Yoshida, K., Cano, L., Kamoun, S., Terauchi, R.
PLoS ONE 8(7): e68529. doi:10.1371/journal.pone.0068529 
  
4. MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii.
Takagi H., Uemura A., Yaegashi H., Tamiru M., Abe A., Mitsuoka C., Utsushi H., Natsume S., Kanzaki H., Matsumura H., Saitoh H., Yoshida K., Cano L.M., Kamoun S., Terauchi R. 
New Phytologist 200(1): 276-83

5. Two distinct secretion systems facilitate tissue invasion by the rice blast fungus Magnaporthe oryzae.
Giraldo, M.C., Dagdas, Y.F., Gupta, Y.K., Mentlak, T.A., Yi, M., Martinez-Rocha, A.L., Saitoh, H., Terauchi, R., Talbot, N.J., Valent, B.
Nature Communication 4:1996. doi: 10.1038/ncomms2996.

6. Deployment of the Burkholderia glumae type III secretion system as an efficient tool for translocating pathogen effectors to monocot cells. 
Sharma, S., Sharma, S., Hirabuchi, A., Yoshida, K., Fujisaki, K., Ito, A., Uemura, A., Terauchi, R., Kamoun, S., Sohn, KH., Jones, JDG., Saitoh, H. 
Plant Journal 74: 701-712. 

7. QTL-seq: Rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations.
 
Takagi, H., Abe, A., Yoshida, K., Kosugi, S., Natsume, S., Mitsuoka, C., Uemura, A., Utsushi, H., Tamiru, M., Takuno, S., Innan, H., Cano, LM., Kamoun, S., Terauchi, R.
 
Plant Journal 74: 174-183. 

8. The rice resistance protein pair RGA4/RGA5 recognize the Magnaporthe oryzae effectors AVR-Pia and AVR-CO39 by direct binding.
 
Cesari, S., Thilliez, G., Ribot, C., Chalvon, V., Michel, C., Jauneau, A., Rivas, S., Alaux, L., Kanzaki, H., Okuyama, Y., Morel, J.B., Fournier, E., Terauchi, R., Kroj, T.  
Plant Cell 25: 1463-1481.

9. OsLG1 regulates a closed panicle trait in domesticated rice.
 
Ishii, T., Numaguchi, K., Miura, K., Yoshida, K., Thanh, P.T., Htun, T. M., Yamasaki, M., Komeda, N., Matsumoto, T., Terauchi, R., Ishikawa, R., Ashikari, M.
Nature Genetics 45: 462-465. 

10. Deep sequencing uncovers commonality in small RNA profiles between transgene-induced and naturally occurring RNA silencing of chalcone synthase-A.
Kasai, M., Matsumura, H., Yoshida, K., Terauchi, R., Taneda, A., Kanazawa, A.
 
BMC Genomics  doi: 10.1186/1471-2164-14-63.

2012

1. Mutation in OsLMS, a gene encoding a protein with two double-stranded RNA binding motifs, causes lesion mimic phenotype and early senescence in rice (Oryza sativa L.).
Undan, JR., Tamiru, M., Abe, A., Yoshida, K., Kosugi, S., Takagi, H., Yoshida, K., Kanzaki, H., Saitoh, H., Fekih, R., Sharma, S., Undan, J., Yano, M., Terauchi, R.
Gene and Genetic System 87: 169–179.

2. Whole genome sequencing and future breeding of rice.
Terauchi, R., Abe, A., Takagi, H., Yoshida, K., Kosugi, S., Natsume, S., Yaegashi, H, Kanzaki, H., Matsumura, H., Mitsuoka, C., Utsushi, H., Tamiru, M.
J. Plant Biochem. Biotechnol. 21: 10-14. 

3. Arms race co-evolution of Magnaporthe oryzae AVR-Pik and rice Pik genes driven by their physical interactions.
Kanzaki, H., Yoshida, K., Saitoh, H., Fujisaki, K., Hirabuchi, A., Alaux, L., Fournier, E., Tharreau, D., Terauchi, R.
Plant Journal 72: 894-907.

4. Large-scale gene disruption in Magnaporthe oryzae identifies MC69, a secreted protein required for infection by monocot and dicot fungal pathogens.
Saitoh, H., Fujisawa, S., Mitsuoka, C., Ito, A., Hirabuchi, A., Ikeda, K., Irieda, H., Yoshino, K., Yoshida, K., Matsumura, H., Tosa, Y., Win, J., Kamoun, S., Takano, Y. and Terauchi, R.
PLoS Pathogens 8:e102711.

5.  The power of QTL Mapping with RILS.
Takuno, S., Terauchi, R., Innan, H.
PLoS One 7:e46545.

6. Effector-mediated suppression of chitin-triggered immunity by Magnaporthe oryzae is necessary for rice blast disease.
Mentlak, TA., Kombrink, A., Shinya, T., Ryder, LS., Otomo, I., Saitoh, H., Terauchi, R., Nishizawa, Y., Shibuya, N., Thomma, BPHJ. and Talbot, NJ.
Plant Cell 24:322-335.

7. OsGA20ox1, a candidate gene for a major QTL controlling seeding vigor in rice.
Abe, A., Takagi, H., Fujibe, T., Aya, K., Kojima, M., Sakakibara, H., Uemura, A., Matsuoka, M. and Terauchi, R.
Theoretical Applied Genetics 125:647-657.

8. Use of intercellular washing fluid to investigate the secreted proteome of the rice-Magnaporthe interaction.
Shenton, MR., Berberich, T., Kamo, M., Yamashita, T., Taira, H. and Terauchi, R.
Journal of Plant Research 125:311-316.

9. The gene expression landscape of thermogenic skunk cabbage suggests critical roles for mitochondrial and vacuolar metabolic pathways in the regulation of thermogenesis.
Ito-Inaba, Y., Hida, Y., Matsumura, H., Masuko, H., Terauchi, R., Watanabe, M. and Inaba, T.
Plant, Cell & Environment 35:554-566.

10. Genome sequencing reveals agronomically important loci in rice using MutMap.
Abe, A., Kosugi, S., Yoshida, K., Natsume, S., Takagi, H., Kanzaki, H., Matsumura, H., Yoshida, K., Mitsuoka, C., Tamiru, M., Innan, H., Cano, L., Kamoun, S. and Terauchi, R.
Nature Biotechnology 30:174-178.

11.  DeepSuperSAGE: high-throughput transcriptome sequencing with now- and next-generation sequencing technologies.
Matsumura, H., Molina, C., Krüger, D.H., Terauchi, R Kahl, G.
In: Tag-based next generation sequencing. (Harbers, M. and Kahl, G. eds), Wiley-Blackwell, pp. 3-21. 

12.  SuperSAGE: powerful serial analysis of gene expression.
Matsumura, H., Urasaki, N., Yoshida, K., Krüger, D.H., Kahl, G., Terauchi, R.
Methods in Molecular Biology 883: 1-17.
 

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2011

1. A multifaceted genomics approach allows the isolation of the rice Pia-blast resistance gene consisting of two adjacent NBS-LRR genes.
Okuyama, Y., Kanzaki, H., Abe, A., Yoshida, K., Tamiru, M., Saitoh, H., Fujibe, T., Matsumura, H., Shenton, M., Galam, DC., Undan, J., Ito, A., Sone, T. and Terauchi, R.
Plant Journal 66:467-479.

2. Studying of genome-wide DNA polymorphisms to understand Magnaporthe-rice interactions.
Terauchi, R., Yoshida, K., Saitoh, H., Kanzaki, H., Okuyama, Y., Fujisaki, K., Miya, A., Abe, A., Tamiru, M. and Tosa, Y.
Australasian Plant Pathology 40:328-334.

3. Association genetics reveals genes critical for Magnaporthe-rice interactions.
Terauchi, R., Yoshida, K., Saitoh, H., Matsumura, H., Oli, MT., Abe, A., Undan, J. and Okuyama, Y.
In: Genome-enabled analysis of plant-pathogen interactions. (Wolpert, T., Shiraishi, T., Collmer, A., Akimitsu, K. and Glazebrook, J. eds) APS press, pp. 33-38.

4. High-throughput SuperSAGE.
Matsumura, H., Yoshida, K., Luo, S., Krueger, DH., Kahl, G., Schroth, GP. and Terauchi, R.
Methods in Molecular Biology 687:135-146.

5. Multiple translocation of the AVR-Pita effector gene among chromosomes of the rice blast fungus Magnaporthe oryzae and related species.
Chuma, I., Isobe, C., Hotta, Y., Ibaragi, K., Futamata, N., Kusaba, M., Yoshida, K., Terauchi, R., Fujita, Y., Nakayashiki, H., Valent, B. and Tosa, Y.
PLoS Pathogens 7:e1002147.

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2010

1. Characterization of endo-1, 3-, 1, 4-beta-glicanases in GH family 12 from Magnaporthe oryzae.
Takeda, T., Takahashi, M., Nakanishi-Masuno, T., Nakano, Y., Saitoh, H., Hirabuchi, A., Fujisawa, S. and Terauchi, R.
Applied Microbiology and Biotechnology 88:1113-1123.

2. Discovery of nucleotide polymorphisms in the Musa gene pool by Ecotilling.
Till, BJ., Jankowicz-Cieslak, J., Sagi, L., Huynh, OA., Utsushi, H., Swennen, R., Terauchi, R. and Mba, C.
Theoretical Applied Genetics 121:1381-1389.

3. Characterization of a cellobiohydrolase (MoCel6A) produced by Magnaporthe oryzae.
Takahashi, M., Takahashi, H., Nakano, Y., Konishi, T., Terauchi, R. and Takeda, T.
Applied Environmental and Micobiology 76:6583-6590.

4. Towards population genomics of effector-effector target interactions.
Terauchi, R. and Yoshida, K.
New Phytologist 187:929-939.

5. High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing.
Matsumura, H., Yoshida, K., Luo, S., Kimura, E., Fujibe, T., Albertyn, Z., Barrero, RA., Krueger, DH., Kahl, G., Schroth, GP. and Terauchi, R.
PLoS One 5:e12010.

6. Gill transcriptome response to changes in environment calcium in the green spotted puffer fish.
Pinto, PI., Matsumura, H., Thorne, MA., Power, DM., Terauchi, R., Reinhardt, R. and Canario, AV.
BMC Genomics 11:476.

7. Metabolome analysis of response to oxidative stress in rice suspension cells overexpressing cell death suppressor Bax inhibitor-1.
Ishikawa, T., Takahara, K., Hirabayashi, T., Matsumura, H., Fujisawa, S., Terauchi, R., Uchimiya, H. and Kawai-Yamada, M.
Plant Cell Physiology 51:9-20.

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2009

1. Serine palmitoyltransferase, the first step enzyme in sphingolipid biosynthesis, is involved in nonhost resistance.
Takahashi, Y., Berberich, T., Kanzaki, H., Matsumura, H., Saitoh, H., Kusano, T. and Terauchi, R.
Molecular Plant-Microbe Interactions 22:31-38.

2. Emerging concepts in effector biology of plant-associated organisms.
Hogenhout, SA., van der Hoorn, RAL., Terauchi, R. and Kamoun, S.
Molecular Plant-Microbe Interactions 22:115-122.

3. SuperSAGE: The drought stress-responsive transcriptome of chickpea roots.
Medina, CMM., Rotter, B., Horres, R., Udupa, S., Besser, B., Bellarmino, LC., Baum, M., Matsumura, H., Terauchi, R., Kahl, G. and Winter, P.
BMC Genomics 9:553

4. Unraveling the roles of sphingolipids in plant innate immunity.
Takahashi, Y., Berbeich, T., Kanzaki, H., Matsumura, H., Saitoh, H., Kusano,T. and Terauchi, R.
Plant Signaling & Behavior, 4:536-538.

5. Functional characterization and modulation of the DNA cleavage efficiency of Type III restriction enconuclease EcoP15I in its interaction with two sites in the DNA target.
Moencke-Buchner, E. , Rothenberg, M., Reich, S., Wagenfuehr, K., Matsumura, H., Terauchi, R., Reuter, M. and Krueger, DH.
Journal of Molecular Biology 387:1309-1319.

6. A multi-faceted genomics approach toward understanding Magnaporthe-rice interactions.
Terauchi, R., Win, J., Kamoun, S., Matsumura, H., Saitoh, H., Yoshida, K., Shenton, M., Berberich, T., Fujisawa, S., Ito, A., Takano, Y. and Tosa, Y.
In: Biology of Molecular Plant-Microbe Interactions. (Lorito M., Woo, SL. and Scala, F. eds ) Vol. 6 (114):1-5.

7. Searching for effectors of Magnaporthe oryzae: a multi-faceted genomics approach.
Terauchi, R., Win, J., Kamoun, S., Matsumura, H., Saitoh, H., Kanzaki, H., Yoshida, K., Shenton, M., Berberich, T., Fujisawa, S., Ito, A., Takano, Y. and Tosa, Y.
In: Advances in genetics, genomics and control of rice blast disease. (Wang, G.-L. and Valent, B. eds) Springer 105-111.

8. Unravelling the interaction of HCMV with dendritic cells using SuperSAGE.
Raftery, M.J., Moncke-Buchner, E., Matsumura, H., Giese, T., Winkelmann, B., Reuter, M., Terauchi, R., Schonrich, G. and Krueger, DH.
Journal of General Virology. 90:2221-2233.

9. SPM1 encoding a vacuole-localized protease is required for infection-related autophagy of the rice blast fungus Magnaporthe oryzae.
Saitoh, H., Fujisawa, S., Ito, A., Mitsuoka, C., Berberich, T., Tosa, Y., Asakura, M., Takano, Y. and Terauchi, R.
FEMS Microbiology Letters 300:115-121.

10. Association genetics reveals three novel avirulence genes from the rice blast fungal pathogen Magnaporthe oryzae.
Yoshida, K., Saitoh, H., Fujisawa, S., Kanzaki, H., Matsumura, H., Yoshida, K., Tosa, Y., Chuma, I., Takano, Y., Win, J., Kamoun, S. and Terauchi, R.
Plant Cell 21:1573-1591.

11. Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleous retrograde signaling.
Kakizaki, T., Matsumura, H., Nakayama, K., Che, F.-S., Terauchi, R. and Inaba, T.
Plant Physiology 151:1339-1353.

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2008

1. High-throughput in planta expression screening identifies an ADP-ribosylation factor (ARF1) involved in non-host resistance and R gene-mediated resistance.
Coemans, B., Takahashi, Y., Berberich, T., Ito, A., Kanzaki, H., Matsumura, H., Saitoh, H., Tsuda, S., Kamoun, S., Sagi, L., Swennen, R. and Terauchi, R.
Molecular Plant Pathology 9:25-36.

2. Functional genomics in a non-model crop: transcriptomics or proteomics?
Carpentier, SC., Coemans, B., Podevin, N., Laukens, K., Witters, E., Matsumura, H., Terauchi, R. Swennen, R. and Panis, B.
Physiologia Plantarum 133:117-30.

3. Self-EcoTILLING to identify single-nulceotide mutations in mutigene family.
Wang, G.-X., Imaizumi, T., Li, W., Saitoh, H., Terauchi, R., Ohsako, T. and Tominaga, T.
Pesticide Biochemisty and Physiology 92:24-29.

4. NbLRK1, a lectin-like recepter kinase protein of Nicotiana benthamiana, interacts with Phytophthora infestans INF1 elicitin and mediates INF1-induced cell death.
Kanzaki, K., Saitoh, H., Takahashi, Y., Berberich, T., Ito, A., Kamoun, S. and Terauchi, R.
Planta 228:977-987.

5. SuperSAGE revealed different classes of early resistance response genes in Capsicum chinense plants harboring L3-resistance gene infected with Pepper mild mottle virus.
Hamada, H., Matsumura, H., Tomita, R., Terauchi, R., Suzuki, K. and Kobayashi, K.
Journal of General Plant Pathology 74:313-321.

6. Spermine signaling plays a significant role in the defense response of Arabidopsis thaliana to cucumber mosaic virus.
Mitsuya, Y., Takahashi, Y., Berberich, T., Miyazaki, A., Matsumura, H., Takahashi, H., Terauchi, R. and Kusano, T.
Journal of Plant Physiology 166:626-643.

7.SuperSAGE: A modern platform for genome-wide quantitative transcript profiling.
Matsumura, H., Krueger, DH., Kahl, G. and Terauchi, R.
Current Pharmaceutical Biotechnology 9:368-374.

8. SuperSAGE: The most advanced transcriptome technology for functional genomics.
Terauchi, R., Matsumura, H., Krueger, DH. and Kahl, G.
In: Handbook of plant functional genomics. (Kahl, G. and Meksam, K. eds) Wiley VCH. 37-54.

9. High-throughput functional screening of genes in planta.
Berberich, T., Takahashi, Y, Saitoh, H. and Terauchi, R.
In: Handbook of plant functional genomics. (Kahl, G. and Meksam, K. eds) Wiley VCH. 113-136.

10. Use of TILLING for reverse and forward genetics of rice.
Rakshit, S., Kanzaki, H., Matsumura, H., Rakshit, A., Fujibe, T., Okuyama, Y., Yoshida, K., Oli, M., Shenton, M., Utsushi, H., Mitsuoka, C., Abe, A., Kiuchi, Y. and Terauchi, R.
In: Handbook of plant functional genomics. (Kahl, G. and Meksam, K. eds) Wiley VCH. 187-197.

11. SuperSAGE.
Matsumura, H., Reich, S., Reuter, M., Krueger, D., Winter, P., Kahl, G. and Terauchi, R.
In: SAGE: Methods in Molecular Biology 387:55-70.

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2007

1. Large-scale DNA polymorphism study of Oryza sativa and O. rufipogon reveals the origin and divergence of Asian rice.
Rakshit, S., Rakshit, A., Matsumura, H., Takahashi, Y., Hasegawa, Y., Ito, A., Ishii, T., Miyashita, N. T. and Terauchi, R.
Theoretical and Applied Genetics. 114:731-743.

2. High-throughput screen of cell death-inducing factors in Nicotiana benthamiana identifies a novel MAPKK that mediates INF1-induced cell death signaling and non-host resistance to Pseudomonas cichorii.
Takahashi, Y., Bin Nasir, K. H., Ito, A., Kanzaki, H., Matsumura, H., Saitoh, H., Fujisawa, S., Kamoun, S. and Terauchi, R.
Plant Journal 49:1030-1040.

3. Discovery of single-nucleotide mutations in acetolactate synthase genes by Ecotilling.
Wang, G.-X., Tan, M.-K., Rakshit, S., Saitoh, H., Terauchi, R., Imaizumi,T., Ohsako, T. and Tominaga, T.
Pesticide Biocehmistry and Physiology 88:143-148

4. Virus-induced gene silencing of 14-3-3 genes abrogates dark repression of nitrate reductase activity in Nicotiana benthamiana.
Hirano, T., Ito, A., Berberich, T., Terauchi, R. and Saitoh, H.
Molecular Genetics and Genomics 278:125-133.

5. A novel MAPKK involved in cell death and defense signaling.
Takahashi, Y., Nasir, KHB., Ito, A., Kanzaki, H., Matsumura, H., Saitoh, H., Fujisawa, S., Kamoun, S. and Terauchi, R.
Plant Signaling & Behavior 2:396-398.

6. Use of Serial Analysis of Gene Expression (SAGE) for transcript profiling in plants.
Sharma, P. C., Matsumura, H. and Terauchi, R.
In: "Genomics-Assisted Crop Improvement" (Varshney, R and Toberosa, R. eds) Springer 227-244.

7. SuperSAGE, a potent tool to dissect plant-microbe interactions.
Terauchi, R., Matsumura, H., Ito, A., Fujisawa, S., Bin Nasir, KH., Saitoh, H., Kamoun, S., Winter, P., Kahl, G., Reuter, M. and Krueger, DH.
In: Biology of Molecular Plant-Microbe Interactions. (Sanchez, F., Ouinto, C., Lopez-Lara I.M. and Geiger, O. eds) Vol. 5:569-575

8. SAGE法による耐病性遺伝子発現解析 
松村英生、寺内良平 
蛋白質核酸酵素(増刊号)

9. イネ−いもち病菌相互作用の解析
寺内良平、松村英生、神崎洋之、高橋芳弘、藤澤志津子、伊東明子、齋藤宏昌 
生物の科学別冊 日本の遺伝子の潮流:131-134.

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2006

1. SuperSAGE array: the direct use of 26-base-pair transcript tags in oligonucleotide arrays.
Matsumura, H., Nasir, KHB., Yoshida, K., Ito, A., Kahl, G., Krueger, DH. and Terauchi R.
Nature Methods 3:469-474.

2. A Point Mutation of Adh1 Gene is Involved in Repression of Coleoptile Elongation under Submergence in Rice.
Saika, H., Matsumura, H., Takano, T., Tsutsumi, N. and Nakazono, M.
Breeding Science 56:69-74.

3. Regulatory mechanisms of ROI generation are affected by rice spl mutations.
Kojo, K., Yaeno, T., Kusumi, K., Matsumura, H., Fujisawa, S., Terauchi, R. and Iba, K.
Plant and Cell Physiology 47:1035-1044.       

4. 有用遺伝子を探索する SuperSAGEアレイ法
松村英生、寺内良平 
バイオテクノロジージャーナル(羊土社)6:730-733.

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2005

1. High-throughput in planta expression screening identifies a class II ethylene responsive element binding factor-like protein that regulates plant cell death and nonhost resistance.
Nasir, K., Takahashi, Y., Ito, A., Saitoh, H., Matsumura, H., Kanzaki, H., Shimizu, T., Ito, A., Fujisawa, S., Sharma, PC., Ohme-Takagi, M., Kamoun, S. and Terauchi, R.
The Plant Journal 43:491-505.

2. SuperSAGE combined with PCR walking allows global gene expression profiling of banana (Musa acuminata), a non-model organism.
Coemans, B., Matsumura, H., Terauchi, R., Remy, S., Swennen, R. and Sagi, L.
Theoretical and Applied Genetics 111:1118-26.

3. Tobacco ZFT1, a transcriptional repressor with a Cys2/His2 type zinc finger motif that functions in spermine-signaling pathway.
Uehara, Y., Takahashi, Y., Berberich T., Miyazaki, A., Takahashi,H., Matsui, K., Ohme-Takagi, M., Saitoh, H., Terauchi, R. and Kusano, T.
Plant Molecular Biology 59:435-448.

4. High-throughput functional screening of plant and pathogen genes in planta.
Terauchi, R., Nasir, KHB., Ito, A., Saitoh, H., Berberich, T. and Takahashi, Y.
Plant Biotechnology 22:455-459.

5. Genetic control of weediness traits and the maintenance of sympatric crop-weed polymorphism in pearl millet (Pennisetum glaucum).
Miura, R. and Terauchi, R.
Molecular Ecology 14:1251-61.

6. SuperSAGE.
Matsumra, H., Ito, A., Saitoh, H., Winter, P., Kahl, G., Reuter, M., Krueger, D. H. and Terauchi, R.
Cellular Microbiology 7:11-18.

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2004

1. Molekulares Wechselspiel von Wirt und Pathogen: Simultane, genomweite Transkriptprofilierung zweier Organismen mit SuperSAGE.
Kahl, G., Winter, P., Matsumura, H., Reuter, M., Kruger, D. and Terauchi R.
Biospektrum 10:511-513.

2. A subset of hypersensitive response marker genes,including HSR203J, is the downstream target of a spermine signal transduction pathway in tobacco.
Takahashi, Y., Uehara, Y., Berberich, T.,Ito, A.,Saitoh, H., Miyazaki, A., Terauchi, Kusano, T.
The Plant Journal. 40:586-595.

3. Serial analysis of gene expression (SAGE) of host plant resistance to the Cassava Mosaic Disease (CMD).
Fregene M., Matsumura H.,Terauchi R.
Plant Molecular Biology 56:563-571.

4. SuperSAGE: a Potent Transcriptome Tool for Eukaryotic Organisms.
Matsumura, H., Reich, S., Reuter, M., Krueger, D. H., Winter, P., Kahl, G. and Terauchi R.
In: S.-M. WANG (ed.) SAGE: Current Technologies and Applications. Horizon Scientific Press:77-90.

5. SAGE (Serial Analysis of Gene Expression) in Magnaporthe grisea profiling of cAMP-inducible genes involved in appresssorium formation.
Irie, T., Matsumura, H., Terauchi, R. and Satioh, H.
In: S. KAWASAKI (ed.) Rice Blast: Interaction with Rice and Control. Kluwer Academic Publishers:23-28.

6. Transgenic rice expressing wasabi defensin gene exhibit s enhanced resistance to blast fungus (Magnaporthe grisea).
Kanzaki, H., Nirasawa, S., Saitoh, H., Ito, M., Nishihara, M., Yamamura, S., Suzuki, K., Terauchi, R. and Nakamura, I.
In: S. KAWASAKI (ed.) Rice Blast: Interaction with Rice and Control. Kluwer Academic Publishers:79-184.

7. ウイルスのベクターとしての利用
齋藤宏昌 
細胞工学別冊 植物細胞工学シリーズ19 新版分子レベルからみた植物の耐病性:202-207.

8. ウイルスベクターを利用した植物防御関連遺伝子の機能解明
齋藤宏昌、寺内良平 
植物病の探究 “In pursuit of essense of plant pathogenesis”:54-58.


2003

1. Overexpression of Bax-inhibitor suppresses the fungal elicitor-induced cell death in rice (Oryza sativa L.) cells.
Matsumura, H., Nirasawa, S., Kiba, A., Urasaki, N., Saitoh, H., Ito, M., Kawai-Yamada, M., Uchimiya, H. and Terauchi, R.
The Plant Journal 33:425-434.

2. Virus-induced silencing of WIPK and SIPK genes reduces resistance against a bacterial pathogen but no effect on INF1 induced HR in Nicotiana benthamiana.
Sharma, P. C., Ito, A., Shimizu, T., Terauchi, R,.Kamoun S. and Saitoh, H.
Molecular Genetics and Genomics 269:583-591.

3. Cytosolic HSP90 and HSP70 are essential components of Inf1-mediated hypersensitive response and non-host resistance to Pseudomonas cichorii in Nitociana benthamiana.
Kanzaki, H., Saitoh, H., Ito, A., Fujisawa, S., Kamoun, S., Katou, S., Yoshioka, H. and Terauchi , R.
Molecular Plant Pathology 4:383-391.

4. Profiling of the genes involved in appressorium formaton of Magnaporhte grisea by Serial Analysis of Gene Expression (SAGE).
Irie, T., Matsumura, H., Terauchi, R. and Saitoh H.
Molecular Genetics and Genomics 270:181-189.

5. Gene expression analysis of plant host-pathogen interactions by SuperSAGE.
Matsumura, H., Reich, S., Ito, A., Saitoh, H., Kamoun, S., Winter, P., Kahl, G., Reuter, M., Krueger, D. and Terauchi R.
Proc. Natl. Acad.Sci. USA 100:15718-15723.

6. C-terminal domain of a hevein-like protein from Wasabia japonica has potent antimicrobial activity.
Kiba, A., Saitoh, H., Nishihara, M., Omiya, K. and Yamamura, S.
Plant and Cell Physiology 44:296-303.

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2002

1. Male and hermaphrodite specific RAPD marker for papaya (Carica papaya L.).
Urasaki, N., Tokumoto, M., Tarora, K., Ban, Y., Kayano, T., Tanaka, H., Oku, H., Chinen, I. and Terauchi, R.
Theoretical and Applied Genetics 104:281-285.

2. Virus-induced silencing of a FtsH gene in Nicotiana benthmiana plants causes a striking bleached leaf phenotype.
Saitoh, H. and Terauchi, R.
Gene and Genetic Systems. 77:335-340.

3. Overexpressing of wasabi defensin gene confers enhanced resistance to blast fungus (Magnaporthe grisea) in transgenic rice.
Kanzaki, H., Nirasawa, S., Saitoh, H., Ito, M., Nishihara, M., Terauchi, R. and Nakamura, I.
Theoretical and Applied Genetics.105:809-814.

4. Rapid and highly reliable sex diagnostic PCR assay for papaya (Carica papaya L.).
Urasaki, N., Tarora, K., Uehara, T., Chinen, I., Terauchi, R. and Tokumoto, M.
Breeding Science 52:333-335.

5. Over-expression of ζglutathione S-transferase in transgenic rice enhances germination and growth at low temperature .
Takesawa, T., Ito M., Kanzaki, Kameya, N. and Nkamura, I.
Molecular Breeding 9: 93-101.

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2001

1. Production of antimicrobial defensin in Nicotiana benthamiana with a potato virus X vector.
Saitoh , H., Kiba, A., Nishihara, M., Yamamura, S., Suzuki, K. and Terauchi, R.
Molecular Plant-Microbe Interactions 14:111-115.

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2000

1. Rapid isolation of promoter sequences with TAIL-PCR: The 5'-flanking regions of Pal and Pgi genes from yams.
Terauchi, R., and Kahl, G.
Molecular and General Genetics 263:554-560.

2. cDNA cloning and molecular analysis of Papaya small GTP-binding protein gene pgp1.
Urasaki, N., Tokumoto, M., Terauchi, R., Tarora, K., Chinen, I., Ban, Y., Kayano, Y. and Tanaka, H.
Gene and Genetic Systems 75:293-298.

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1999

1. Transcript profiling in rice (Oryza sativa L.) seedlings using serial analysis of gene expression (SAGE).
Matsumura , H., Nirasawa, S. and Terauchi R.
The Plant Journal 20:1-8.

2. A method for estimating nucleotide diversity from AFLP data.
Innan, H., Terauchi R., Kahl, G. and Tajima, F.
Genetics 151:1157-1164.

3. Mapping of the Dioscorea tokoro genome: AFLP markers linked to sex.
Terauchi R. and Kahl, G.
Genome 42:752-762.

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